A phylogeny that allows for lateral gene transfer (LGT) can be thought of as a strictly branching tree (all of whose branches are vertical) to which lateral branches have been added. Given that the goal of phylogenetics is to depict evolutionary history, we should look for the best supported phylogenetic network and not restrict ourselves to considering trees. However, the obvious extensions of popular tree-based methods such as maximum parsimony and maximum likelihood face a serious problem—if we judge networks by (...) fit to data alone, networks that have lateral branches will always fit the data at least as well as any network that restricts itself to vertical branches. This is analogous to the well-studied problem of overfitting data in the curve-fitting problem. Analogous problems often have analogous solutions and we propose to treat network inference as a case of model selection and use the Akaike Information Criterion (AIC). Strictly tree-like networks are more parsimonious than those that postulate lateral as well as vertical branches. This leads to the conclusion that we should not always infer LGT events whenever it would improve our fit-to-data, but should do so only when the improved fit is larger than the penalty for adding extra lateral branches. (shrink)

Bayesian methods have become among the most popular methods in phylogenetics, but theoretical opposition to this methodology remains. After providing an introduction to Bayesian theory in this context, I attempt to tackle the problem mentioned most often in the literature: the “problem of the priors”—how to assign prior probabilities to tree hypotheses. I first argue that a recent objection—that an appropriate assignment of priors is impossible—is based on a misunderstanding of what ignorance and bias are. I then consider different methods (...) of assigning prior probabilities to trees. I argue that priors need to be derived from an understanding of how distinct taxa have evolved and that the appropriate evolutionary model is captured by the Yule birth–death process. This process leads to a well-known statistical distribution over trees. Though further modifications may be necessary to model more complex aspects of the branching process, they must be modifications to parameters in an underlying Yule model. Ignoring these Yule priors commits a fallacy leading to mistaken inferences both about the trees themselves and about macroevolutionary processes more generally. (shrink)

The project of this paper is to understand what a phylogenetic tree represents and to discuss some of the implications that this has for the practice of systematics. At least the first part of this task, if not both parts, might appear trivial—or perhaps better suited for a single page in a textbook rather than a scholarly research paper. But this would be a mistake. While the task of interpreting phylogenetic trees is often treated in a trivial way, their interpretation (...) is tied to foundational conceptual questions at the heart of systematics—questions whose answers are hotly disputed. I have previously argued that widely shared ideas about the meaning and interpretation of phylogenetic trees are inconsistent with species concepts other than some genealogical version of a phylogenetic species concept (Velasco 2008). Here I rely on a similar approach and concentrate on the implications of the necessary conditions underlying the inferences that we make using phylogenetic trees. I argue that common practices for the interpretation and use of trees are in conflict and that unacceptable principles about species as units of phylogeny must be given up. According to the view that I will develop, all phylogenetic trees depict the history of populations. The branches on trees represent collections of population lineages through time and the splits represent population lineage splits. This is true regardless of whether the tips of the trees are themselves populations, or are species or higher taxa. Although this conclusion might be paired naturally with a view that species must be monophyletic groups, this population-centric view of trees is independent of that view of species. If we still want to have species that are paraphyletic groups of populations, this is permissible as long as we also do not treat species as the units of phylogeny. This population-centric view opposes a species-centric view of phylogeny and might be called a “rank-free” approach since it entails that we do not need to determine which groups are species (which is partly a ranking question) in order to build a tree. This conclusion and the argument for it are meant to be consistent with, but not require, acceptance of the conclusions of Velasco (2008) regarding species. (shrink)

This paper aims to offer an account of affective experiences within Predictive Processing, a novel framework that considers the brain to be a dynamical, hierarchical, Bayesian hypothesis-testing mechanism. We begin by outlining a set of common features of affective experiences that a PP-theory should aim to explain: feelings are conscious, they have valence, they motivate behaviour, and they are intentional states with particular and formal objects. We then review existing theories of affective experiences within Predictive Processing and delineate two families (...) of theories: Interoceptive Inference Theories and Error Dynamics Theories. We highlight the strengths and shortcomings of each family of theories and develop a synthesis: the Affective Inference Theory. Affective Inference Theory claims that valence corresponds to the expected rate of prediction error reduction. In turn, the particular object of a feeling is the object predicted to be the most likely cause of expected changes in prediction error rate, and the formal object of a feeling is a predictive model of the expected changes in prediction error rate caused by a given particular object. Finally, our theory shows how affective experiences bias action selection, directing the organism towards allostasis and towards optimal levels of uncertainty in order to minimise prediction error over time. (shrink)

Vocal bursts are non-linguistic affectively-laden sounds with a crucial function in human communication, yet their affective structure is still debated. Studies showed that ratings of valence and arousal follow a V-shaped relationship in several kinds of stimuli: high arousal ratings are more likely to go on a par with very negative or very positive valence. Across two studies, we asked participants to listen to 1,008 vocal bursts and judge both how they felt when listening to the sound (i.e. core affect (...) condition), and how the speaker felt when producing it (i.e. perception of affective quality condition). We show that a V-shaped fit outperforms a linear model in explaining the valence-arousal relationship across conditions and studies, even after equating the number of exemplars across emotion categories. Also, although subjective experience can be significantly predicted using affective quality ratings, core affect scores are significantly lower in arousal, less extreme in valence, more variable between individuals, and less reproducible between studies. Nonetheless, stimuli rated with opposite valence between conditions range from 11% (study 1) to 17% (study 2). Lastly, we demonstrate that ambiguity in valence (i.e. high between-participants variability) explains violations of the V-shape and relates to higher arousal. (shrink)

This article is an investigation into the field of neurotheology, a controversial field which has attracted criticism from both the scientific and religious community and which is often quite divided among its own practitioners. Regretfully, but not too unexpectedly, science has gotten entangled with ideology, as we shall see, with proponents on all sides of the spectrum using findings from the laboratory in support of their own philosophical positions. We will begin by exploring some definitions of the field and then (...) move on to examine the claims made by the different scientists working in this area, before examining what conclusions we can draw for spirituality. (shrink)

This paper is basically a presentation of the tenets of Pierre Bourdieu’s philosophy in a language and level that can be easily understood by Filipino students and scholars of philosophy, cultural studies and Philippine studies. The discussion of Bourdieu’s philosophy revolves around 1) his concepts of habitus, field and symbolic violence; 2) his critique of television; 3) his theory of capitals; 4) some implications of his theory of capitals; and 5) his being public intellectual. The ultimate aim of this paper (...) is to suggest some aspects and dimensions of Philippine society and culture that can be analyzed using some of bourdieu’s thoughts as interpretive frameworks, as well as to challenge the said Filipino students and scholars of philosophy, cultural studies and Philippine studies to creatively and effectively appropriate such theories for the enrichment of the theoretical corpus of Philippine studies. This paper is part of a series of similar works done by one of the co-authors that dealt with Adorno, Schleiermacher and Dilthey, Heidegger, Gadamer and Bultmann, and Lyotard. (shrink)

El martes 26 de abril de 2016 en la Universidad Pontificia Bolivariana de Medellín, en el curso “De la analítica a los acto de habla” del Doctorado en Filosofía, tuvimos la oportunidad de compartir y hacer una conversatorio con el filósofo mexicano Dr. Alejandro Tomasini Bassols, investigador del Instituto de Investigaciones Filosóficas y profesor de filosofía en la Facultad de Filosofía y Letras de la UNAM. El profesor Tomasini es uno de los investigadores más reconocidos en la obra del Filósofo (...) austriaco Ludwig Wittgenstein, además de haber desarrollado una importante obra alrededor de la tradición analítica y de algunos problemas actuales como la discusión sobre la pena capital. También el profesor Tomasini en su visita a Colombia, inicialmente participó en Medellín con una conferencia titulada “Derecho y objetividad”, en la Universidad Pontificia Bolivariana y luego en la Feria del Libro de Bogotá –FILBO- realizó la presentación y conferencia del libro Hacer mundos: el nombrar y la significatividad. Previo a su viaje a Bogotá, interactuó con el curso doctoral en filosofía y de este encuentro académico presentamos el siguiente diálogo. (shrink)

La migración internacional nos enfrenta con problemas irresolubles desde la figura moderna del Estado nacional, su concepto de ciudadanía y su noción de justicia. Juan Carlos Velasco critica las limitaciones y la orientación de las políticas contemporáneas que nos hacen percibir a la migración como una “invasión”, y propone un modo radicalmente diferente de entender e intervenir el fenómeno desde lo trasnacional. Nacer de uno u otro lado de una línea divisoria es un evento azaroso, no obstante delimitar la (...) frontera es una construcción histórico-política: la desigualdad en las oportunidades que ofrecen las naciones es una situación estructural de injusticia que se perpetúa con las políticas de exclusión de los migrantes y la deslegitimación de su derecho a buscar una vida mejor. Esa circunstancia genera fracturas sociales, injustificables pero normalizadas, que imposibilitan alcanzar la justicia global. Velasco presenta un análisis completo que abarca las dimensiones política, jurídica y moral del tema, en el que lleva a la filosofía política a un terreno práctico del que se desprenden las claves para entender y actuar en esta nueva era en la que, debido a los conflictos sociales y políticos, la migración vuelve a ser argumento de discusión relevante. (Texto de la CONTRAPORTADA del libro). (shrink)

Common ancestry is a central feature of the theory of evolution, yet it is not clear what “common ancestry” actually means; nor is it clear how it is related to other terms such as “the Tree of Life” and “the last universal common ancestor”. I argue these terms describe three distinct hypotheses ordered in a logical way: that there is a Tree of Life is a claim about the pattern of evolutionary history, that there is a last universal common ancestor (...) is an ontological claim about the existence of an entity of a specific kind, and that there is universal common ancestry is a claim about a causal pattern in the history of life. With these generalizations in mind, I argue that the existence of a Tree of Life entails a last universal common ancestor, which would entail universal common ancestry, but neither of the converse entailments hold. This allows us to make sense of the debates surrounding the Tree, as well as our lack of knowledge about the last universal common ancestor, while still maintaining the uncontroversial truth of universal common ancestry. (shrink)

Este libro identifica las tendencias generales de la pol tica internacional en la posguerra fr a, mira la regi n y algunas de las estrategias particulares de la pol tica exterior y econ mica de M xico. De esta forma contribuye a explicar la complejidad de los cambios y las continuidades en la pol tica internacional y en la mexicana.

This paper provides an overview of recent US Department of Health and Human Services initiatives and efforts — under the leadership of the General Counsel, the Secretary, and the President — regarding legal preparedness for public health emergencies. In addressing this topic, the paper focuses on four core elements comprising public health legal preparedness:effective legal authorities to support necessary public health activities;competencies of public health professionals to know and then to apply those laws;coordination of the application of laws across jurisdictions (...) and across multiple sectors; andinformation and best practices in public health law. (shrink)

Resumen En este artículo se examina el Darwinismo Neural en su explicación de la evolución de la conciencia humana, contrastando su metodología con la utilizada por Richard Lewontin, Richard Levins y Steven Rose, quienes han hecho importantes aportaciones en el estudio de los sistemas vivos desde un punto de vista dialéctico. Concluimos que la explicación interaccionista de la evolución de la conciencia planteada en el DN, supera muchas de las deficiencias del determinismo biológico; sin embargo, al compartir algunos lineamientos con (...) el cartesianismo, mantiene un carácter a-histórico insuficiente para la explicación de la conciencia humana. Finalmente, proponemos la adopción de una teoría explicativa de la conciencia humana que considere las relaciones existentes en ella, no sólo como interacciones sino también como interpenetraciones ontogénicas y filogenéticas.This article examines Neural Darwinism proposed as an explanation of evolution of human consciousness. His methodology is contrasted with that used by Richard Lewontin, Richard Levins, and Steven Rose, who made important contributions to the study of living systems from a dialectical point of view. We conclude that the interactionist explanation of the evolution of conscience put forward in ND overcomes many of the deficiencies proper to biological determinism. However, as ND also shares many of the foundations of the Cartesian approach, it maintains a non-historical character, insufficient for the account of human consciousness. We suggest the adoption of an alternative theory, able to fully explain human conscience which must consider the whole of existing relations in it, and, instead of merely considering them as interactions, they have to be observed as dialectical interpenetrations. (shrink)

: This article presents a definition of action that links empirical facts with normative reasons to form an explanation of rational agency with predictive capabilities. This idea is developed along the lines of pragmatism which holds that a set of beliefs is a matter of linguistic evaluation from a particular community. This notion is related to the idea of facts as empirical information that is cognitively apprehended. Such information is regarded as an input which is later contrasted to expected behavioral (...) responses from the agent. The deviation of such observed behavior with respect to the expected one represents an evaluative output that is understood as the definition of reasonably expected behavior. Action is, thus, understood as the outcome of such an evaluative process. (shrink)

In this paper I address the question of whether the probabilities that appear in models of stochastic gene expression are objective or subjective. I argue that while our best models of the phenomena in question are stochastic models, this fact should not lead us to automatically assume that the processes are inherently stochastic. After distinguishing between models and reality, I give a brief introduction to the philosophical problem of the interpretation of probability statements. I argue that the objective vs. subjective (...) distinction is a false dichotomy and is an unhelpful distinction in this case. Instead, the probabilities in our models of gene expression exhibit standard features of both objectivity and subjectivity. (shrink)

Drosophila flies began to be used in the study of species evolution during the late 1930s. The geneticists Natasha Sivertzeva-Dobzhansky and Elizabeth Reed pioneered this work in the United States, and María Monclús conducted similar studies in Spain. The research they carried out with their husbands enabled Drosophila population genetics to take off and reveals a genealogy of women geneticists grounded in mutual inspiration. Their work also shows that women were present in population genetics from the beginning, although their contributions (...) have previously remained unacknowledged. The similarities between their research biographies also illustrate their position in a genealogy of partnerships working on Drosophila genetics. (shrink)

In March 2021, the Spanish Congress approved the law regulating euthanasia, that regulates both euthanasia and physician-assisted suicide (PAS). In this article, we analyse the Spanish law regulating euthanasia and PAS, comparing it with the rest of the European laws on euthanasia and PAS (Netherlands, Belgium and Luxembourg). Identified strengths of the Spanish law, with respect to other norms, are that it is a law with many safeguards, which broadly recognises professionals’ right to conscientious objection and the specification that it (...) makes on the prior comprehensive care of the patient, including the approach to care dependency. Regarding its shortcomings, the law does not differentiate well between euthanasia and PAS; it barely assigns a role to the healthcare team as a whole (similar to other regulations); it does not clarify the functions of the different professionals involved; it does not detail the specific composition and duration of theevaluation commission; it has not been accompanied by a prior or simultaneous regulation of palliative care; and, lastly, the period of time to implement the law is too short. (shrink)

This article reviews Bergson’s proposed solution to the classical mind-body problem, confronting his system with previous alternatives, but mainly Kant's. To this end, it offers an analysis of Matter and memory’s main argument, aimed at discerning its consequences for a competing definition of knowledge.

Un autore che esprime la propria visione del mondo attraverso immagini può essere considerato un filosofo? La filosofia è un dialogo tra quanti si confrontano entro gli orizzonti che il pensiero ha sedimentato nel tempo. Chi si esprime attraverso l’esclusivo esercizio delle arti visive o della musica non può essere considerato filosofo, questo nonostante l’artista esprima la propria visione del mondo al pari del filosofo. Ciò non impedisce a un autore che crei immagini o azioni o suoni di esp...

Arthur Danto è figura di spicco della critica d’arte contemporanea nordamericana. I suoi saggi, le opinioni espresse su The Nation (è dal 1984 che occupa le stesse colonne una volta affidate a Clement Greenberg) o su Artforum hanno una forte presa sulla scena artistica. Danto è una figura anomala nell’ambito della critica d’arte in quanto, pur essendo un filosofo, frequenta gli studi degli artisti e le gallerie, comprese quelle più radical. La filosofia e la critica d’arte utilizzano linguagg...

While walking within the installation, even though moving among its elements, the image cannot really be grasped in its entirety. Hence, Paladino deals with three distincdy contrasting concepts: the part refers to the whole; the part has totality in itself; the part refers only to itself (being unable to take in the totality of the image, the part can only be related to as an autonomous fragment). And the different positions are incompatible because many believe they can experience the whole (...) through the part, ruling out that the world is made up of autonomous fragments. In turn, the idea that reality is made up of fragments independent of one another is inconsistent with the idea that we can grasp the totality. Stele deals with a theme that has been recurrent in Paladinos work since he began working at the end of the 1970s: the world is an intellectual construction that art gives shape to. (shrink)

Discurso de posesión como Decano de la Facultad de Filosofía y Letras.

The present paper explores the phenomenology of disorientation and its relationship with self-consciousness. Section 1 discusses previous literature on the links between self-location and self-consciousness and proposes a distinction between minimal self-location and integrated self-location. The double aim of the paper is to use this distinction to deepen our understanding of spatial disorientation, and to use the phenomenology of disorientation to elucidate the role that integrated self-location plays in shaping self-consciousness. Section 2 starts by looking at the experience of being (...) “turned around”, which is a common experience of disorientation. This analysis leads to the conclusion that integrated self-location is transmodal and depends on all three egocentric axes, and that disorientation destabilizes this integrated self-location. Section 3 explores a corpus of reports of disorientation episodes and highlights four key characteristics of these experiences and their links to self-consciousness, focusing on the transformations in both the lived body and the experience of space. The central thesis of this paper is that during disorientation a destabilization of integrated self-location results in a diminished form of self-consciousness. (shrink)

There is a remarkable gap in the academic literature when it comes to group navigation, and procedural metacognition in group navigation is an important but virtually unexplored topic. The present paper aims to fill this gap by providing an account of how metacognitive feelings evaluate and regulate group navigational processes. The paper reviews animal studies and ethnographic work to elucidate three exiting processes in human group navigation: many-wrongs, leadership and emergent sensing. This is followed by an analysis of the role (...) of procedural metacognition in the navigational processes involved in each of these three processes. This analysis shows that procedural metacognition serves to regulate and evaluate group navigation in a flexible, process-specific way. When performance issues arise during group navigation, the emergence of negative affective states makes the navigational process conspicuous, prompting a modulation of said process. (shrink)

This paper investigates ontological dimensions of the blockchain by asking what kind of socio-technical object bitcoin is. It discusses both blockchain's political qualities and the political forms enabled by its emergence. It first observes recent approaches to the ontology of money and the political qualities of the ledgers used by the current fractional reserve banking model. It then directs the same questions at blockchain technology. The paper discusses an ontology proposed by Ole Bjerg and argues in favour of a mixed-ontology (...) approach to blockchains. It then questions the political qualities of the distributed ledger as a digital object and highlights the apparent absence of authority figures in the model. Finally, it argues that the political ontology of the blockchain can be framed as the displacement of authority from institutional actors into instrumental control of trust, in a dynamically distributed environment. (shrink)