This dissertation examines aspects of the interplay between computing and scientific practice. The appropriate foundational framework for such an endeavour is rather real computability than the classical computability theory. This is so because physical sciences, engineering, and applied mathematics mostly employ functions defined in continuous domains. But, contrary to the case of computation over natural numbers, there is no universally accepted framework for real computation; rather, there are two incompatible approaches --computable analysis and BSS model--, both claiming (...) to formalise algorithmic computation and to offer foundations for scientific computing. The dissertation consists of three parts. In the first part, we examine what notion of 'algorithmic computation' underlies each approach and how it is respectively formalised. It is argued that the very existence of the two rival frameworks indicates that 'algorithm' is not one unique concept in mathematics, but it is used in more than one way. We test this hypothesis for consistency with mathematical practice as well as with key foundational works that aim to define the term. As a result, new connections between certain subfields of mathematics and computer science are drawn, and a distinction between 'algorithms' and 'effective procedures' is proposed. In the second part, we focus on the second goal of the two rival approaches to real computation; namely, to provide foundations for scientific computing. We examine both frameworks in detail, what idealisations they employ, and how they relate to floating-point arithmetic systems used in real computers. We explore limitations and advantages of both frameworks, and answer questions about which one is preferable for computational modelling and which one for addressing general computability issues. In the third part, analog computing and its relation to analogue (physical) modelling in science are investigated. Based on some paradigmatic cases of the former, a certain view about the nature of computation is defended, and the indispensable role of representation in it is emphasized and accounted for. We also propose a novel account of the distinction between analog and digital computation and, based on it, we compare analog computational modelling to physical modelling. It is concluded that the two practices, despite their apparent similarities, are orthogonal. (shrink)

This dissertation examines aspects of the interplay between computing and scientific practice. The appropriate foundational framework for such an endeavour is rather real computability than the classical computability theory. This is so because physical sciences, engineering, and applied mathematics mostly employ functions defined in continuous domains. But, contrary to the case of computation over natural numbers, there is no universally accepted framework for real computation; rather, there are two incompatible approaches --computable analysis and BSS model--, both claiming (...) to formalise algorithmic computation and to offer foundations for scientific computing. -/- The dissertation consists of three parts. In the first part, we examine what notion of 'algorithmic computation' underlies each approach and how it is respectively formalised. It is argued that the very existence of the two rival frameworks indicates that 'algorithm' is not one unique concept in mathematics, but it is used in more than one way. We test this hypothesis for consistency with mathematical practice as well as with key foundational works that aim to define the term. As a result, new connections between certain subfields of mathematics and computer science are drawn, and a distinction between 'algorithms' and 'effective procedures' is proposed. -/- In the second part, we focus on the second goal of the two rival approaches to real computation; namely, to provide foundations for scientific computing. We examine both frameworks in detail, what idealisations they employ, and how they relate to floating-point arithmetic systems used in real computers. We explore limitations and advantages of both frameworks, and answer questions about which one is preferable for computational modelling and which one for addressing general computability issues. -/- In the third part, analog computing and its relation to analogue (physical) modelling in science are investigated. Based on some paradigmatic cases of the former, a certain view about the nature of computation is defended, and the indispensable role of representation in it is emphasized and accounted for. We also propose a novel account of the distinction between analog and digital computation and, based on it, we compare analog computational modelling to physical modelling. It is concluded that the two practices, despite their apparent similarities, are orthogonal. (shrink)

In this paper I examine Paul Thagard's computational approach to studying science, which is a contribution to the cognitive science of science. I present several criticisms of Thagard's approach and use them to motivate some suggestions for alternative approaches in cognitive science of science. I first argue that Thagard does not clearly establish the units of analysis of his study. Second, I argue that Thagard mistakenly applies the same model to both individual and group decision making. Finally, I (...) argue that in attempting to account for psychological and social processes as well as providing a philosophical model of successful reasoning Thagard attempts to explain too much with one model, thus straining the plausibility of his model. (shrink)

This volume reflects the ‘philosophy of science in practice’ approach and takes a fresh look at traditional philosophical problems in the context of natural, social, and health research. Inspired by the work of Nancy Cartwright that shows how the practices and apparatuses of science help us to understand science and to build theories in the philosophy of science, this volume critically examines the philosophical concepts of evidence, laws, causation, and models and their roles in the process of scientific (...) reasoning. Each chapter is an important one in the philosophy of science, while the volume as a whole deals with these philosophical concepts in a unified way in the context of actual scientific practice. This volume thus aims to contribute to this new direction in the philosophy of science.​. (shrink)

Computational philosophy (CP) aims at investigating many important concepts and problems of the philosophical and epistemological tradition in a new way by taking advantage of information-theoretic, cognitive, and artificial intelligence methodologies. I maintain that the results of computational philosophy meet the classical requirements of some Peircian pragmatic ambitions. Indeed, more than a 100 years ago, the American philosopher C.S. Peirce, when working on logical and philosophical problems, suggested the concept of pragmatism(pragmaticism, in his own words) as a logical (...) criterion to analyze what words and concepts express through their practical meaning. Many words have been spent on creative processes and reasoning, especially in the case of scientific practices. In fact, many philosophers have usually offered a number of ways of construing hypotheses generation, but they aim at demonstrating that the activity of generating hypotheses is paradoxical, obscure, and thus not analyzable. Those descriptions are often so far from Peircian pragmatic prescription and so abstract to result completely unknowable and obscure. To dismiss this tendency and gain interesting insight about the so-called logic of scientific discovery we need to build constructive procedures, which could play a role in moving the problem-solving process forward by implementing them in some actual models. The computational turn gives us a new way to understand creative processes in a strictly pragmatic sense. In fact, by exploiting artificial intelligence and cognitive science tools, computational philosophy allows us to test concepts and ideas previously conceived only in abstract terms. It is in the perspective of these actual computational models that I find the central role of abduction in the explanation of creative reasoning in science. I maintain that the computational philosophy analysis of model-based and manipulative abduction and of external and epistemic mediators is important not only to delineate the actual practice of abduction, but also to further enhance the development of programs computationally adequate in rediscovering, or discovering for the first time, for example, scientific hypotheses or mathematical theorems. The last part of the paper is devoted to illustrating the problem of the extra-theoretical dimension of reasoning and discovery from the perspective of some mathematical cases derived from calculus and geometry. (shrink)

To explain why, in scientific problem solving, a diagram can be “worth ten thousand words,” Jill Larkin and Herbert Simon (1987) relied on a computer model: two representations can be “informationally” equivalent but differ “computationally,” just as the same data can be encoded in a computer in multiple ways, more or less suited to different kinds of processing. The roots of this proposal lay in cognitive psychology, more precisely in the “imagery debate” of the 1970s on whether there (...) are image-like mental representations. Simon (1972, 1978) hoped to solve this debate by thoroughly reducing the differences between forms of mental representations (e.g., between images and sentences) to differences in computational efficiency; to carry out this reduction, he borrowed from computer science the concepts of data type and of data structure. I argue that, in the end, his account amounted to nothing more than characterizing representations by the fast operations on them. This analysis then allows me to assess what Simon’s approach actually achieves when transported from psychology to the study of scientific representations, as in Larkin and Simon (1987): it allows comparing, not representations in and of themselves, but rather the computational roles they play in particular problem-solving processes—that is, representations together with a particular way of using them. (shrink)

Most previous works on responsible conduct of research have focused on good practices in laboratory experiments. Because computation now rivals experimentation as a mode of scientific research, we sought to identify the responsibilities of researchers who develop or use computational modeling and simulation. We interviewed nineteen experts to collect examples of ethical issues from their experiences in conducting research with computational models. We gathered their recommendations for guidelines for computational research. Informed by these interviews, we describe (...) the respective professional responsibilities of developers and users of computational models in research. In particular, we examine whether developers should disclose the full computational codes, and we explain how developers and users should minimize harms from improper uses of models. (shrink)

This paper discusses the relevance of models for cognitive science that integrate mechanistic and computational aspects. Its main hypothesis is that a model of a cognitive system is satisfactory and explanatory to the extent that it bridges phenomena at multiple mechanistic levels, such that at least several of these mechanistic levels are shown to implement computational processes. The relevant parts of the computation must be mapped onto distinguishable entities and activities of the mechanism. The ideal is contrasted (...) with two other accounts of modeling in cognitive science. The first has been presented by David Marr in combination with a distinction of “levels of computation”. The second builds on a hierarchy of “mechanistic levels” in the sense of Carl Craver. It is argued that neither of the two accounts secures satisfactory explanations of cognitive systems. The mechanistic-computational ideal can be thought of as resulting from a fusion of Marr’s and Craver’s ideals. It is defended as adequate and plausible in light of scientific practice, and certain metaphysical background assumptions are discussed. (shrink)

Computer simulations have conventionally been understood to be either extensions of formal methods such as mathematical models or as special cases of empirical practices such as experiments. Here, I argue that computer simulations are best understood as instruments. Understanding them as such can better elucidate their actual role as well as their potential epistemic standing in relation to science and other scientific methods, practices and devices.

We examine two very different approaches to formalising real computation, commonly referred to as “Computable Analysis” and “the BSS approach”. The main models of computation underlying these approaches—bit computation and BSS, respectively—have also been put forward as appropriate foundations for scientific computing. The two frameworks offer useful computability and complexity results about problems whose underlying domain is an uncountable space. Since typically the problems dealt with in physical sciences, applied mathematics, economics, and engineering are also defined in uncountable domains, (...) it is fitting that we choose between these two approaches a foundational framework for scientific computing. However, the models are incompatible as to their results. What is more, the BSS model is highly idealised and unrealistic; yet, it is the de facto implicit model in various areas of computational mathematics, with virtually no problems for the everyday practice. This paper serves three purposes. First, we attempt to delineate what the goal of developing foundations for scientific computing exactly is. We distinguish between two very different interpretations of that goal, and on the separate basis of each one, we put forward answers about the appropriateness of each framework. Second, we provide an account of the fruitfulness and wide use of BSS, despite its unrealistic assumptions. Third, according to one of our proposed interpretations of the scope of foundations, the target domain of both models is a certain mathematical structure. In a clear sense, then, we are using idealised models to study a purely mathematical structure. The third purpose is to point out and explain this intriguing phenomenon and attempt to make connections with the typical case of idealised models of empirical domains. (shrink)

Contemporary debates about scientific institutions and practice feature many proposed reforms. Most of these require increased efforts from scientists. But how do scientists’ incentives for effort interact? How can scientific institutions encourage scientists to invest effort in research? We explore these questions using a game-theoretic model of publication markets. We employ a base game between authors and reviewers, before assessing some of its tendencies by means of analysis and simulations. We compare how the effort expenditures of (...) these groups interact in our model under a variety of settings, such as double-blind and open review systems. We make a number of findings, including that open review can increase the effort of authors in a range of circumstances and that these effects can manifest in a policy-relevant period of time. However, we find that open review’s impact on authors’ efforts is sensitive to the strength of several other influences. (shrink)

More than a hundred years ago, the American philosopher C. S. Peirce suggested the idea of pragmatism as a logical criterion to analyze what words and concepts express through their practical meaning. Many words have been spent on creative processes and reasoning, especially in the case of scientific practices. In fact, philosophers have usually offered a number of ways of construing hypotheses generation, but all aim at demonstrating that the activity of generating hypotheses is paradoxical, illusory or obscure, and (...) thus not analyzable. The “computational turn” gave us a new way to understand creative processes in a strictly pragmatic sense. Artificial Intelligence and Cognitive Science tools allow us to test concepts and ideas previously conceived in abstract terms. It is in the perspective of these actual models that we find the central role of abduction in the explanation of creative reasoning in science. What I call theoretical abduction certainly illustrates much of what is important in abductive reasoning, especially the objective of selecting and creating a set of hypotheses that are able to dispense good explanations of data, but fails to account for many cases of explanation occurring in science or in everyday reasoning when the exploitation of the environment is crucial. The concept of manipulative abduction is devoted to capture the role of action in many interesting situations: action provides otherwise unavailable information that enables the agent to solve problems by starting and performing a suitable abductive process of generation or selection of hypotheses. Many external things, usually inert from the epistemological point of view, can be transformed into what I call epistemic mediators, which are illustrated in the last part of the paper. (shrink)

In this paper I evaluate Herbert Simon 's important computational approach to scientific discovery, which can be characterized as a contribution to both the "cognitive science of science" and to naturalized philosophy of science. First, I tackle the empirical adequacy of Simon 's account of discovery, arguing that his claims about the discovery process lack evidence and, even if substantiated, they disregard the important social dimension of scientific discovery. Second, I discuss the normative dimension of Simon 's (...) account, here I argue that Simon 's project is best understood as a contribution to "android epistemology." I conclude with some comments on the direction a naturalized yet normative philosophy of science might take. (shrink)

summaryThis paper argues that an epistemological duality between mind/brain and an external world is an uncritically held working assumption in recent computational models of cognition. In fact, epistemological dualism largely drives computational models of mentality and representation: An assumption regarding an external world of perceptual objects and distal stimuli requires the sort of mind/brain capable of representing and inferring true accounts of such objects. Hence we have two distinct ontologies, one denoting external world objects, the other cognitive events (...) and neural transformations. A basic question is then raised and explored: If the elements of these two different ontologies are so radically different, how can the one access the other?The last part of the paper sketches an alternative to ED and the associated two ontologies account. Instead of external world objects being construed as independent givens, initiating perceptual processes, they are rather interpreted as ‘computational constructs’. It is argued at length that this account is far more consistent with recent computational models of mind/brain than the two ontologies model associated with ED. It is further claimed that an ontology of cognitive and neural states, as well as an external world ontology, have no other epistemic status that as contingent working hypotheses. As such, both ontologies are in principle amenable to revision as evidence, explanatory models, and scientific practices mutually readjust and redefine one another over time. (shrink)

The ArgumentIn its reconstruction of scientific practice, philosophy of science has traditionally placed scientific theories in a central role, and has reduced the problem of mediating between theories and the world to formal considerations. Many applications of scientific theories, however, involve complex mathematical models whose constitutive equations are analytically unsolvable. The study of these applications often consists in developing representations of the underlying physics on a computer, and using the techniques of computer simulation in order to (...) learn about the behavior of these systems. In many instances, these computer simulations are not simple number-crunching techniques. They involve a complex chain of inferences that serve to transform theoretical structures into specific concrete knowledge of physical systems. In this paper I argue that this process of transformation has its own epistemology. I also argue that this kind of epistemology is unfamiliar to most philosophy of science, which has traditionally concerned itself with the justification of theories, not with their application. Finally, I urge that the nature of this epistemology suggests that the end results of some simulations do not bear a simple, straightforward relation to the theories from which they stem. (shrink)

This article aims to develop a new account of scientific explanation for computer simulations. To this end, two questions are answered: what is the explanatory relation for computer simulations? And what kind of epistemic gain should be expected? For several reasons tailored to the benefits and needs of computer simulations, these questions are better answered within the unificationist model of scientific explanation. Unlike previous efforts in the literature, I submit that the explanatory relation is between the simulation (...) model and the results of the simulation. I also argue that our epistemic gain goes beyond the unificationist account, encompassing a practical dimension as well. (shrink)

This paper tries to express a critical point of view on the computational turn in philosophy by looking at a specific field of study: philosophy of science. The paper starts by briefly discussing the main contributions that information and communication technologies have given to the rising of computational philosophy of science, and in particular to the cognitive modelling approach. The main question then arises, concerning how computational models can cope with the presence of tacit knowledge in science. (...) Would it be possible to develop new ways of handling this specific type of knowledge, in order to incorporate it in computational models of scientific thinking? Or should tacit knowledge lead us to other approaches in using computer sciences to model scientific cognition? These questions are addressed by making reference to a detailed case study of a recent innovation development in the field of biotechnology. (shrink)

We examine the interrelationships between analog computational modelling and analogue (physical) modelling. To this end, we attempt a regimentation of the informal distinction between analog and digital, which turns on the consideration of computing in a broader context. We argue that in doing so one comes to see that (scientific) computation is better conceptualised as an epistemic process relative to agents, wherein representations play a key role. We distinguish between two, conceptually distinct, kinds of representation that, we argue, (...) are both involved in each case of computing. Based on the semantic and syntactic properties of each of these representations, we put forward a new account of the distinction between analog and digital computing. We discuss how the developed account is able to explain various properties of different models of computation, and we finish by conceptually comparing analog computational modelling to analogue (scale) modelling. It is concluded that, contrary to the standard view, the two practices are orthogonal, differing both in their foundations and in the epistemic functions they fulfil. (shrink)

The confrontations of stakeholder visions about agriculture and food production has become a focal point in the public sphere, coinciding with a diversification of agrifood models. This study analyzes the debates stemming from the coexistence of these models, particularly during the initial term of neoliberal-centrist Emmanuel Macron’s presidency in France. Employing collective monitoring from 2017 to 2021, a corpus of 958 online news and blog articles was compiled. Using a computational analysis, we reveal the framings and controversies emerging from (...) this media discourse. The macro-structuring of discourse on model coexistence revolves around scientific, economic and political framings. Coexistence is a complex of debates based on specific frames associated with specific arenas and actor configurations: growth of organic agriculture, transformations of agrifood systems, sciences of production and impacts, livestock and meat diet controversies, agroecological innovations, CAP reform criticism, discourse of peasant agriculture and State-Profession _co-gestion_. Employing global sentiment analysis and focusing on salient controversies, namely EGAlim law, pesticide regulations, and agribashing, we show the shift from conciliation to a hardening of debates. Finally, we discuss the causes and consequences of this trend. The political will to support the transition of agriculture remains influenced by the _co-gestion_ system, an inherited configuration of decision-makers instrumental in the agricultural modernization. As a consequence, significant agricultural challenges, particularly highlighted in the scientific macro-frame, persist unresolved. This lock-in of the agrifood system is based on defensive strategies that challenge the democratic debate about food and agricultural practices. (shrink)

Research in multi-agent systems typically assumes a regulative model of social practice. This model starts with agents who are already capable of acting autonomously to further their individual ends. A social practice, according to this view, is a way of achieving coordination between multiple agents by restricting the set of actions available. For example, in a world containing cars but no driving regulations, agents are free to drive on either side of the road. To prevent collisions, (...) we introduce driving regulations, insisting that everyone drives on the left hand side of the road. We accept this limitation on our freedom because it lowers the probability of a collision. -/- This paper describes AI systems that are based on the constitutive view of social practice. According to this alternative view, there are certain actions that are only available to the agent because he is participating in a practice of a certain sort. For example, you can swing a peculiarly shaped piece of wood without participating in any particular practice - but this action will only constitute a strike if you are participating in a game of baseball. I can raise my hand whenever I like, but this only counts as voting for the motion within the institution of voting. But not all the examples are from frivolous, optional or institutional activities. Sellars and Brandom argue that even the fundamental act of assertion is only possible within the context of a particular social practice: the Game of Giving and Asking for Reasons. -/- The constitutive view, which is familiar to philosophers, is relatively unknown within the AI community. -/- The central aim of this paper is to show how the constitutive view of practice can be put to use in AI applications. (shrink)

Explanations in cognitive science and computational neuroscience rely predominantly on computational modeling. Although the scientific practice is systematic, and there is little doubt about the empirical value of numerous models, the methodological account of computational explanation is not up-to-date. The current chapter offers a systematic account of computational explanation in cognitive science and computational neuroscience within a mechanistic framework. The account is illustrated with a short case study of modeling of the mirror neuron (...) system in terms of predictive coding. (shrink)

Computer models and simulations have become, since the 1960s, an essential instrument for scientific inquiry and political decision making in several fields, from climate to life and social sciences. Philosophical reflection has mainly focused on the ontological status of the computational modeling, on its epistemological validity and on the research practices it entails. But in computational sciences, the work on models and simulations are only two steps of a longer and richer process where operations on data are (...) as important as, and even more time and energy-consuming than modeling itself. Drawing on two study cases—computational embryology and computational epidemiology—this article contributes to filling the gap by focusing on the operations of producing and re-using data in computational sciences. The different phases of the scientific and artisanal work of modelers include data collection, aggregation, homogenization, assemblage, analysis and visualization. The article deconstructs the ideas that data are self-evident informational aggregates and that data-driven approaches are exempted from theoretical work. More importantly, the paper stresses the fact that data are constructed and theory laden not only in their fabrication, but also in their reusing. (shrink)

The present paper analyses the topic of scientific discovery and the problem of the existence of a logical framework involved in such endeavour. We inquire how several non-monotonic logic frameworks and other formalisms can account for such a task. In the same vein, we analyse some key aspects of the historical and theoretical debate surrounding scientific discovery, in particular, the context of discovery and context of justification context distinction. We present an argument concerning the weakening of the discovery/justification (...) context dichotomy based on the descriptive accent contained in the non-monotonic logic perspective together with its epistemological concerns. (shrink)

Using four examples of models and computer simulations from the history of psychology, I discuss some of the methodological aspects involved in their construction and use, and I illustrate how the existence of a model can demonstrate the viability of a hypothesis that had previously been deemed impossible on a priori grounds. This shows a new way in which scientists can learn from models that extends the analysis of Morgan (1999), who has identified the construction and manipulation of models (...) as those phases in which learning from models takes place. (shrink)

Both the irreducible complexity of biological phenomena and the aim of a universalized biology (life-as-it-could-be) have lead to a deep methodological shift in the study of life; represented by the appearance of ALife, with its claim that computational modelling is the main tool for studying the general principles of biological phenomenology. However this methodological shift implies important questions concerning the aesthetic, engineering and specially the epistemological status of computational models in scientific research: halfway between the well established (...) categories of theory and experiment. ALife models become powerful epistemic artefacts allowing the simulation of emergent phenomena, the interaction between different levels of organization and the integration of different causal factors in the very same manipulable object. The use of computational models in ALife can be classified in four main categories depending on their position between theoretical and empirical practices: generic, conceptual, functional and mechanistic. For each of these categories we analyse their epistemic value and select paradigmatic examples that illustrate how ALife models can be fruitfully inserted in the study of life. (shrink)

Interest in the computational aspects of modeling has been steadily growing in philosophy of science. This paper aims to advance the discussion by articulating the way in which modeling and computational errors are related and by explaining the significance of error management strategies for the rational reconstruction of scientific practice. To this end, we first characterize the role and nature of modeling error in relation to a recipe for model construction known as Euler’s recipe. We (...) then describe a general model that allows us to assess the quality of numerical solutions in terms of measures of computational errors that are completely interpretable in terms of modeling error. Finally, we emphasize that this type of error analysis involves forms of perturbation analysis that go beyond the basic model-theoretical and statistical/probabilistic tools typically used to characterize the scientific method; this demands that we revise and complement our reconstructive toolbox in a way that can affect our normative image of science. (shrink)

University Abstract Philosophers have sought to improve upon the logical empiricists’ model of scientific reduction. While opportunities for integration between the cognitive and the neural sciences have increased, most philosophers, appealing to the multiple realizability of mental states and the irreducibility of consciousness, object to psychoneural reduction. New Wave reductionists offer a continuum of comparative goodness of intertheoretic mapping for assessing reductions. Their insistence on a unified view of intertheoretic relations obscures epistemically significant crossscientific relations and engenders dismissive (...) conclusions about psychology. Richer, more sensitive accounts of explanatory pluralism and mechanistic explanation in science advocate multi-level approaches in cross-scientific settings and criticize the distance of the standard philosophical objections from working scientists’ practices and discoveries. The Heuristic Identity Theory, a new, scientifically informed version of the psycho-physical identity theory, incorporates these insights, showing how multiple realizability is an argument for (not against) identities in science and why, therefore, consciousness is not irreducible. (shrink)

Elimination controversies are ubiquitous in philosophy and the human sciences. For example, it has been suggested that humanraces, hysteria, intelligence, mental disorder, propositional attitudes such as beliefs and desires, the self, and the super-ego should beeliminated from the list of respectable entities in the human sciences. I argue that eliminativist proposals are often presented in theframework of an oversimplified ‘‘phlogiston model’’ and suggest an alternative account that describes ontological elimination on a gradualscale between criticism of empirical assumptions and conceptual (...) choices. (shrink)

Computational models of group opinion dynamics are one of the most active fields of sociophysics. In recent years, advances in model complexity and, in particular, the possibility to connect these models with detailed data describing individual behaviors, preferences and activities, have opened the way for the simulations to describe quantitatively selected, real world social systems. The simulations could be then used to study ‘what-if’ scenarios for opinion change campaigns, political, ideological or commercial. The possibility of the practical application (...) of the attitude change models necessitates that the research community working in the field should consider more seriously the moral aspects of their efforts, in particular the potential for their use for unintended goals. The paper discusses these issues, and offers a suggestion for a new research direction: using the attitude models to increase the awareness and detection of social manipulation cases. Such research would offer a scientific challenge and meet the ethical criteria. (shrink)

Even though the philosophy of simulation is intended as a comprehensive reflection about the practice of computer simulation in contemporary science, its output has been disproportionately shaped by research on equation-based simulation in the physical and climate sciences. Hence, the particularities of alternative practices of computer simulation in other scientific domains are not sufficiently accounted for in the current philosophy of simulation literature. This article centres on agent-based social simulation, a relatively established type of simulation in the social (...) sciences, to exemplify this claim. The analysis advanced has a twofold goal. First, it shows that the philosophy of agent-based social simulation, mostly developed by practitioners themselves, is, on one hand, heavily influenced by the methodological features of agent-based modelling and by the loose and fragmented character of social theory and, on the other hand, distinctively shaped by contrasting views of what it implies to do social research with virtual or artificial societies. Second, it suggests ways in which cross-fertilisation could enrich the philosophical understanding of computer simulation both in agent-based social simulation and in the philosophy of simulation. (shrink)

According to the "experimenter's regress", disputes about the validity of experimental results cannot be closed by objective facts because no conclusive criteria other than the outcome of the experiment itself exist for deciding whether the experimental apparatus was functioning properly or not. Given the frequent characterization of simulations as "computer experiments", one might worry that an analogous regress arises for computer simulations. The present paper analyzes the most likely scenarios where one might expect such a "simulationist's regress" to surface, and, (...) in doing so, discusses analogies and disanalogies between simulation and experimentation. I conclude that, on a properly broadened understanding of robustness, the practice of simulating mathematical models can be seen to have sufficient internal structure to avoid any special susceptibility to regress-like situations. (shrink)

Studies of scientific practice demonstrate that the development of scientific models is an enactive and emergent process. Scientists make meaning through processes such as perspective taking, finding patterns, and following intuitions. In this paper, we focus on how a group of fourth grade learners and their teacher engaged in interpretation in ways that align with core ideas and practices in kinematics and computing. Cycles of measuring and modeling––including computer programming––helped to support classroom interactions that highlighted the interpretive (...) nature of modeling and participation in model construction as a knowledge-building process. We draw on literature from the history and philosophy of science in order to analyze the students’ interpretive actions as forms of epistemic and representational agency, constituting a construct we term disciplined interpretation. We demonstrate how students’ disciplined interpretative moves help to position them as owners of their own design decisions and their rights to interpret the phenomena they were modeling, data collected from those phenomena, and the scientific and computational models themselves. We present four extended episodes that characterize the nature of activity in the classroom and the development of students’ disciplined interpretations in terms of learning to recognize scientific patterns amid complex perceptual fields, and to represent them in ways that support sensemaking. (shrink)

Modelers are tackling ever more complex systems with the aid of computation. Model-based inferences can play a key role in their ability to handle complexity and produce reliable or informative models. We study here the role of model-based inference in the modern field of computational systems biology. We illustrate how these inferences operate and analyze the material and theoretical bases or conditions underlying their effectiveness. Our investigation reiterates the significance and centrality of model-based reasoning in day-to-day (...) problem-solving practices, and the role that debugging processes of partial or incomplete models can play in scientific inference and scientific discovery, particularly with respect to complex systems. We present several deeper implications such an analysis has for philosophy of science regarding the role of models in scientific practice. (shrink)

The phenomenon of consciousness has always been a central question for philosophers and scientists. Emerging in the past decade are new approaches to the understanding of consciousness in a scientific light. This book presents a series of essays by leading thinkers giving an account of the current ideas prevalent in the scientific study of consciousness. The value of the book lies in the discussion of this interesting though complex subject from different points of view ranging from physics, computer (...) science to the cognitive sciences. Reviews of controversial ideas related to the philosophy of mind from western and eastern sources including classical Indian first person methodologies provide a breadth of coverage that has seldom been attempted in a book before. Additionally, chapters relating to the new approaches in computational modelling of higher order cognitive function and consciousness are included. The book is of great value for established as well as young researchers from a wide cross-section of interdisciplinary scientific backgrounds, aiming to pursue research in this field, as well as an informed public. * Presents the latest developments in the scientific study of consciousness * Critically reviews different theoretical and philosophical explanations related to the subject * An important book for both students and researchers in designing research projects on consciousness. (shrink)

Recent trends towards an e-Science offer us the opportunity to think about the specific epistemological changes created by computational empowerment in scientific practices. In fact, we can say that a computational epistemology exists that requires our attention. By ‘computational epistemology’ I mean the computational processes implied or required to achieve human knowledge. In that category we can include AI, supercomputers, expert systems, distributed computation, imaging technologies, virtual instruments, middleware, robotics, grids or databases. Although several authors (...) talk about the extended mind and computational extensions of the human body, most of these proposals don’t analyze the deep epistemological implications of computer empowerment in scientific practices. At the same time, we must identify the principal concept for e-Science: Information . Why should we think about a new epistemology for e-Science? Because several processes exist around scientific information that require a good epistemological model to be understood. (shrink)

The Epistemology Of Computer Simulation has developed as an epistemological and methodological analysis of simulative sciences using quantitative computational models to represent and predict empirical phenomena of interest. In this paper, Executable Cell Biology and Agent-Based Modelling are examined to show how one may take advantage of qualitative computational models to evaluate reachability properties of reactive systems. In contrast to the thesis, advanced by EOCS, that computational models are not adequate representations of the simulated empirical systems, it (...) is shown how the representational adequacy of qualitative models is essential to evaluate reachability properties. Justification theory, if not playing an essential role in EOCS, is exhibited to be involved in the process of advancing and corroborating model-based hypotheses about empirical systems in ECB and ABM. Finally, the practice of evaluating model-based hypothesis by testing the simulated systems is shown to constitute an argument in favour of the thesis that computer simulations in ECB and ABM can be put on a par with scientific experiments. (shrink)

Computational models can aid in the development of philosophical views concerning the structure and growth of scientific knowledge. In cognitive psychology, computational models have proved valuable for describing the structures and processes of thought and for testing these models by writing and running computer programs using the techniques of artificial intelligence. Similarly, in the philosophy of science models can be developed that shed light on the structure, discovery, and justification of scientific theories. This paper briefly describes (...) a computational model of problem solving and learning that has been used to simulate several kinds of scientific reasoning. (shrink)

Designing models of complex phenomena is a difficult task in engineering that can be tackled by composing a number of partial models to produce a global model of the phenomena. We propose to embed the partial models in software agents and to implement their composition as a cooperative negotiation between the agents. The resulting multiagent system provides a global model of a phenomenon. We applied this approach in modelling two complex physiological processes: the heart rate regulation and the (...) glucose-insulin metabolism. Beyond the effectiveness demonstrated in these two applications, the idea of using models associated to software agents to give reason of complex phenomena is in accordance with current tendencies in epistemology, where it is evident an increasing use of computational models for scientific explanation and analysis. Therefore, our approach has not only a practical, but also a theoretical significance: agents embedding models are a technology suitable both to representing and to investigating reality. (shrink)

The purpose of this paper is to describe some limitations on scientific behaviorist and computational models of the mind. These limitations stem from the inability of either model to account for the integration of experience and behavior. Behaviorism fails to give an adequate account of felt experience, whereas the computational model cannot account for the integration of our behavior with the world. Both approaches attempt to deal with their limitations by denying that the domain outside (...) their limits is a part of psychology. These attempts to turn the shortcomings of the two models into virtues would be more convincing if their limitations were not diametrically opposed. I will argue that in each case the limitations are too restrictive unless the theories are augmented by physiology. (shrink)

In this article, I use a mental models computational account of representation to illustrate some details of my previously presented inferential model of scientific understanding. The hope is to shed some light on possible mechanisms behind the notion of scientific understanding. I argue that if mental models are a plausible approach to modelling cognition, then understanding can best be seen as the coupling of specific rules. I present our beliefs as ?ordinary? conditional rules, and the coupling (...) process as one where the consequent of one ordinary rule (OR) matches and activates the antecedent of the rule to which it is coupled in virtue of the activation of an intermediate ?inference? rule. I argue that on this approach knowledge of an explanation is the activation of ORs in a cognitive hierarchy, while understanding is achieved when those activated ORs are also coupled via correct inference rules. I do not directly address issues regarding the plausibility of mental models themselves. This article should therefore be seen as an exercise in refining the inferential model within an already presupposed computational setting, not one of arguing for the psychological adequacy of computational approaches. (shrink)

There have been recent disagreements in the philosophy of neuroscience regarding which sorts of scientific models provide mechanistic explanations, and which do not. These disagreements often hinge on two commonly adopted, but conflicting, ways of understanding mechanistic explanations: what I call the “representation-as” account, and the “representation-of” account. In this paper, I argue that neither account does justice to neuroscientific practice. In their place, I offer a new alternative that can defuse some of these disagreements. I argue that (...) individual models do not provide mechanistic explanations by themselves. Instead, individual models are always used to complement a huge body of background information and pre-existing models about the target system. With this in mind, I argue that mechanistic explanations are distributed across sets of different, and sometimes contradictory, scientific models. Each of these models contributes limited, but essential, information to the same mechanistic explanation, but none can be considered a mechanistic explanation in isolation of the others. (shrink)

By applying research in artificial intelligence to problems in the philosophy of science, Paul Thagard develops an exciting new approach to the study of scientific reasoning. This approach uses computational ideas to shed light on how scientific theories are discovered, evaluated, and used in explanations. Thagard describes a detailed computational model of problem solving and discovery that provides a conceptually rich yet rigorous alternative to accounts of scientific knowledge based on formal logic, and he (...) uses it to illuminate such topics as the nature of concepts, hypothesis formation, analogy, and theory justification. (shrink)

Philosophical understanding of experimental scientific practice is impeded by disciplinary differences, notably that between philosophy and sociology of science. Severing the two limits the stock of philosophical case studies to narrowly circumscribed experimental episodes, centered on individual scientists or technologies. The complex relations between scientists and society that permeate experimental research are left unexamined. In consequence, experimental fields rich in social interactions have received only patchy attention from philosophers of science. This paper sketches a remedy for both the (...) symptom and its root cause. An empirical study of social interactions in an established field of biomedicine grounds a robust account of success in experimental practice. The core idea is the concept of collaboration, of participants working together on a common project toward a shared goal. The interactive social integument of experimental research is both examined and enacted in a study integrating socio-historical research and philosophical investigation. The two approaches are used in concert to explicate the concept of scientific objectivity. Their joint explication of this contested epistemic ideal demonstrates that philosophical and sociological approaches can work together toward a social epistemology of scientific practice. The explication is in three stages. First, a minimal framework for investigating collaborative activities is established. Social action is understood and evaluated in terms of the connection between shared goals that participants hope to accomplish together, and the coordinated means by which they try to do so. This connection is explicated as participation, a relation mediating between a group and its members, which includes minimal constraints of instrumental rationality. Second, this framework is fleshed out via empirical study of scientific practices. The focal case examines the intersection of immunology and stem cell research in mid-20th century biomedicine, tracing the key social interactions within and among laboratory groups, as the field of blood stem cell research emerged in the 1960s and advanced throughout the next four decades. The study yields a robust empirical result. Participants consistently recognize two aspects of scientific success: construction of improved models of blood cell development, and formation of new boundaries among scientific groups. In the third and final stage, this result is generalized to other experimental episodes and shown to fit with recent accounts of models in scientific practice. The generalized result approximates a familiar normative view of scientific knowledge. An epistemic ideal of scientific objectivity in practice is then derived from this robust general result, using the minimal constraints on rational participation. The derivation is analogous to specification of ends in moral philosophy; given the means taken and assuming some hope of success, what must the goal of scientific inquiry be like? The aim of science so conceived corresponds to a classic conception of scientific objectivity: knowledge independent of epistemic criteria specific to particular persons or groups. This result weaves together sociological and philosophical accounts of science, explicating the epistemic ideal of objectivity in relation to social aspects of scientific practice. This undercuts the entrenched dualism between normative, vs. descriptive approaches to scientific knowledge. Socio-historical study of science does not deflate, but vindicates, scientific objectivity. Philosophy and sociology are recast as collaborating participants in articulating social epistemology of science. (shrink)

Computers have transformed science and help to extend the boundaries of human knowledge. However, does the validation and diffusion of results of computational inquiries and computer simulations call for a novel epistemological analysis? I discuss how the notion of novelty should be cashed out to investigate this issue meaningfully and argue that a consequentialist framework similar to the one used by Goldman to develop social epistemologySocial epistemology can be helpful at this point. I highlight computational, mathematical, representational, and (...) social stages on which the validity of simulation-based belief-generating processes hinges, and emphasize that their epistemic impact depends on the scientific practices that scientists adopt at these different stages. I further argue that epistemologists cannot ignore these partially novel issues and conclude that the epistemology of computational inquiries needs to go beyond that of models and scientific representations and has cognitive, social, and in the present case computational, dimensions. (shrink)

Models are of central importance in many scientific contexts. The centrality of models such as the billiard ball model of a gas, the Bohr model of the atom, the MIT bag model of the nucleon, the Gaussian-chain model of a polymer, the Lorenz model of the atmosphere, the Lotka-Volterra model of predator-prey interaction, the double helix model of DNA, agent-based and evolutionary models in the social sciences, or general equilibrium models of markets (...) in their respective domains are cases in point. Scientists spend a great deal of time building, testing, comparing and revising models, and much journal space is dedicated to introducing, applying and interpreting these valuable tools. In short, models are one of the principal instruments of modern science. -/- Philosophers are acknowledging the importance of models with increasing attention and are probing the assorted roles that models play in scientific practice. The result has been an incredible proliferation of model-types in the philosophical literature. Probing models, phenomenological models, computational models, developmental models, explanatory models, impoverished models, testing models, idealized models, theoretical models, scale models, heuristic models, caricature models, didactic models, fantasy models, toy models, imaginary models, mathematical models, substitute models, iconic models, formal models, analogue models and instrumental models are but some of the notions that are used to categorize models. While at first glance this abundance is overwhelming, it can quickly be brought under control by recognizing that these notions pertain to different problems that arise in connection with models. For example, models raise questions in semantics (what is the representational function that models perform?), ontology (what kind of things are models?), epistemology (how do we learn with models?), and, of course, in philosophy of science (how do models relate to theory?; what are the implications of a model based approach to science for the debates over scientific realism, reductionism, explanation and laws of nature?). (shrink)

The aim of this paper is to give an account of the change in Feyerabend's philosophy that made him abandon methodological monism and embrace methodological pluralism. In this paper I offer an explanation in terms of a simple model of 'change of belief through evidence'. My main claim is that the evidence triggering this belief revision can be identified in Feyerabend's technical work in the interpretation of quantum mechanics, in particular his reevaluation of Bohr's contribution to it. This highlights (...) an under-appreciated part of Feyerabend's early work and makes it central to an understanding of the dynamics in his overall philosophy of science. (shrink)

This handbook offers the first comprehensive reference guide to the interdisciplinary field of model-based reasoning. It highlights the role of models as mediators between theory and experimentation, and as educational devices, as well as their relevance in testing hypotheses and explanatory functions. The Springer Handbook merges philosophical, cognitive and epistemological perspectives on models with the more practical needs related to the application of this tool across various disciplines and practices. The result is a unique, reliable source of information that (...) guides readers toward an understanding of different aspects of model-based science, such as the theoretical and cognitive nature of models, as well as their practical and logical aspects. The inferential role of models in hypothetical reasoning, abduction and creativity once they are constructed, adopted, and manipulated for different scientific and technological purposes is also discussed. Written by a group of internationally renowned experts in philosophy, the history of science, general epistemology, mathematics, cognitive and computer science, physics and life sciences, as well as engineering, architecture, and economics, this Handbook uses numerous diagrams, schemes and other visual representations to promote a better understanding of the concepts. This also makes it highly accessible to an audience of scholars and students with different scientific backgrounds. All in all, the Springer Handbook of Model-Based Science represents the definitive application-oriented reference guide to the interdisciplinary field of model-based reasoning. (shrink)